Publications

2016

Böttjer, D.*, J.E. Dore, D.M. Karl, R.M. Letelier, C. Mahaffey, S.T. Wilson, M.J. Church. 2016. Temporal variability in nitrogen fixation and particulate nitrogen export at Station ALOHA. Limnology and Oceanography doi: 10.1002/lno.10386

Ferron, S., del Valle, D.A., Björkman, K.M., Quay, P.D., Church, M.J., Karl, D.M. 2016. Application of membrane inlet mass spectrometry to measure aquatic gross primary production by the 18O in vitro Limnology and Oceanography: Methods, doi: 10.1002/lom3.10116.

Rii, YM, S Duhamel, RR Bidigare, DM Karl, DJ Repeta, MJ Church. 2016. Diversity and productivity of photosynthetic picoeukaryotes in biogeochemically distinct regions of the South East Pacific Ocean. Limnology and Oceanogrpahy doi: 10.1002.lno.10255

2015

Björkman, KM, MJ Church, JK Doggett, DM Karl. 2015. Differential assimilation of inorganic carbon and leucine by prochlorococcus and non-pigmented bacteria in the oligotrophic North Pacific Subtropical Gyre. Frontiers in Marine Science doi: 10.3389/fmicb.2015.01401

Barone B, RR Bidigare, MJ Church, DM Karl, RM Letelier, AE White. 2015. Particle distributions and dynamics in the euphotic zone of the North Pacific Subtropical Gyre. Journal Geophysical Research – Oceans, doi:10.1002/2015JC010774

Bryant, JA, FO Aylward, JM Eppley, DM Karl, MJ Church, EF DeLong. 2015. Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre. The ISME Journal doi: 10.1038/ismej.2015.221

Viviani DA, DM Karl, MJ Church. 2015. Variability in photosynthetic production of dissolved and organic carbon in the North pacific Subtropical Gyre. Frontiers in Marine Science, doi: 10.3389/fmars.2015.00073

White, AE, RM Letelier, AL Whitmire, B Barone, RR Bidigare, MJ Church, DM Karl. 2015. Phenology of particle size distribution and primary productivity in the North Pacific Subtropical Gyre. Journal of Geophysical Research – Oceans: 7381-7399.

Wilson ST, B Barone, F Ascani, RR Bidigare, MJ Church, DA del Valle, ST Dhyrman, S Ferron, JN Fitzsimmons, LW Juranek, ZS Kolber, RM Letelier, S Martinez-Garcia, DP Nicholson, KJ Richards, YM Rii, M Rouco, DA Viviani, AE White, JP Zehr, DM Karl. 2015. Short-term variability in euphotic zone biogeochemistry and primary productivity at Station ALOHA: A case study of summer 2012. Global Biogeochemical Cycles 29, doi:10.1002/2015GB005141

2014

Bates N, Y Astor, M Church, K Currie, J Dore, M Gonaález-Dávila, L Lorenzoni, F Muller-Karger, J Olafsson, M Santa-Casiano (2014) A time-series view of changing ocean chemistry due to ocean uptake of anthropogenic CO2 and ocean acidification. Oceanography 27: 126-141.

Böttjer D, DM Karl, RM Letelier, DA Viviani, MJ Church (2014) Experimental assessment of diazotroph responses to elevated seawater pCO2 in the North Pacific Subtropical Gyre. Global Biogeochemical Cycles 28: 601-616.

Dore JE, MJ Church, DM Karl, DW Sadler, RM Letelier (2014) Paired windward and leeward biogeochemical time series reveal consistent surface ocean CO2 trends across the Hawaiian Ridge. Geophysical Research Letters 41: 6459-6467.

Durham B, J Grote, K Whittaker, S Bender, H Luo, S Grim, J Brown, J Casey, A Dron, L Florez-Leiva, A Krupke, C Luria, A Mine, O Nigro, S Pather, A Talarmin, E Wear, T Weber, J Wilson, MJ Church, EF DeLong, DM Karl, G Steward, J Eppley, N Kyrpides, S Schuster, M Rappe (2014) Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage with the Roseobacter clade possessing an unusually small genome. Standards in Genomic Sciences 9.

Gradoville MR, AE White, D Böttjer, MJ Church, RM Letelier (2014) Diversity trumps acidification: Lack of evidence for carbon dioxide enhancement of Trichodesmium community nitrogen or fixation at Station ALOHA. Limnology and Oceanography 59: 645-659.

Karl DM, MJ Church (2014) Microbial oceanography and the Hawaii Ocean Time-series programme. Nature Reviews Microbiology 12: 699-713.

Lincoln SA, B Wai, JM Eppley, MJ Church, RE Summons, EF DeLong (2014) Planktonic Euryarchaeota are a significant source of achaeal tetraether lipids in the ocean. Proceedings of the National Academy of Sciences, USA 111: 9858-9863.

Lincoln SA, B Wai, JM Eppley, MJ Church, RE Summons, EF DeLong (2014) Reply to Schouten et al.: Marine Group II planktonic Euryarchaeota are a significant source of achaeal tetraether lipids in the ocean. Proceedings of the National Academy of Sciences, USA 111: E4286-E4286.

Robidart JC, MJ Church, JP Ryan, F Ascani, ST Wilson, D Bombar, R Marin, KJ Richards, DM Karl, CA Scholin, JP Zehr (2014) Ecogenomic sensor reveals controls on N2-fixing microorganisms in the North Pacific Ocean. The ISME Journal 8: 1175-1185.

2013

Church MJ, D Böttjer (2013). Diversity, Ecology, and Biogeochemical Influence of N2-fixing Microorganisms in the Sea. Encyclopedia of Biodiversity (vol.2).  Edited by S.A. Levin. pp. 608-625.

Church MJ, MW Lomas, F Muller-Karger (2013) Sea change: Charting the course for biogeochemical ocean time-series research in a new millennium. Deep Sea Research Part II 93: 2-15.

Li B, DM Karl, RM Letelier, RR Bidigare, MJ Church (2013) Temporal and depth variability of chromophytic phytoplankton in the North Pacific Subtropical Gyre. Deep Sea Research Part II 93: 84-95.

Pasulka AL, MR Landry, DAA Taniguchi, AG Taylor, MJ Church (2013) Temporal dynamics of phytoplankton and heterotrophic protists at station ALOHA. Deep Sea Research Part II 93: 44-57.

2012

Friedrich T, A Timmermann, A Abe-Ouchi, NR Bates, MO Chikamoto, MJ Church, JE Dore, DK Gledhill, M Gonzalez-Davila, M Heinemann, T Ilyina, JH Jungclaus, E McLeod, Anne Mouchet, JM Santana-Casiano (2012) Detecting regional anthropogenic trends in ocean acidification against natural variability. Nature Climate Change 2: 167-171.

Guidi L, PHR Calil, S Duhamel, KM Björkman, SC Doney, GA Jackson, B Li, MJ Church, S Tozzi, ZS Kolber, KJ Richards, AA Fong, RM Letelier, G Gorsky, L Stemmann, DM Karl (2012) Does eddy‐eddy interaction control surface phytoplankton distribution and carbon export in the North Pacific Subtropical Gyre? Journal of Geophysical Research-Biogeosciences 117 (G2), doi: 10.1029/2012JG001984.

Hunt DE, Y Lin, MJ Church, DM Karl, SG Tringe, LK Izzo, ZI Johnson (2012) Relationship between abundance and specific activity of bacterioplankton in open ocean surface waters. Applied and Environmental Microbiology 79: 177-184.

Juranek LW, PD Quay, RA Feely, D Lockwood, DM Karl, MJ Church (2012) Biological production in the NE Pacific and its influence on air‐sea CO2 flux: Evidence from dissolved oxygen isotopes and O2/Ar. Journal of Geophysical Research-Oceans 117 (C5), doi: 10.1029/2011JC007450.

Karl DM, MJ Church, JE Dore, RM Letelier, C Mahaffey (2012) Predictable and efficient carbon sequestration in the North Pacific Ocean supported by symbiotic nitrogen fixation. Proceedings of the National Academy of Sciences, USA 109: 1842-1849.

Luo Y-W, SC Doney, LA Anderson, M Benavides, A Bode, S Bonnet, KH Boström, D Böttjer, DG Capone, EJ Carpenter, YL Chen, MJ Church, JE Dore, LI Falcón, A Fernández, RA Foster, K Furuya, F Gómez, K Gundersen, AM Hynes, DM Karl, S Kitajima, RJ Langlois, J LaRoche, RM Letelier, E Marañón, DJ McGillicuddy Jr, PH Moisander, CM Moore, B Mourino-Carballido, MR Mulholland, JA Needoba, KM Orcutt, AJ Poulton, P Raimbault, AP Rees, L Riemann, T Shiozaki, A Subramaniam, T Tyrrell, KA Turk-Kubo, M Varela, TA Villareal, EA Webb, AE White, J Wu, JP Zehr (2012) Database of diazotrophs in global ocean: abundances, biomass and nitrogen fixation rates. Earth System Science Data Discussions 5: 47-106.

Luo Y-W , HW Ducklow, MAM Friedrichs, MJ Church, DM Karl, SC Doney (2013) Interannual variability of primary production and dissolved organic nitrogen storage in the North Pacific Subtropical Gyre. Journal of Geophysical Research- Biogeosciences 117 (G3), doi: 10.1029/2011JG001830.

Wilson ST, D Böttjer, MJ Church, DM Karl (2012) Comparative assessment of nitrogen fixation methodologies, conducted in the oligotrophic North Pacific ocean. Applied and Environmental Microbiology 78: 6516-6523.

2011

Brzezinski MA, JW Krause, MJ Church, DM Karl, B Li, JL Jones, B Updyke (2011) The annual silica cycle of the North Pacific subtropical gyre. Deep Sea Research Part I 58: 988-1001.

Grote J, C Bayindirli, K Bergauer, PC de Moraes, H Chen, L D’Ambrosio, B Edwards, B Fernández-Gómez, M Hamisi, R Logares, D Nguyen, YM Rii, E Saeck, C Schutte, B Widner, MJ Church, GF Steward, DM Karl, EF DeLong, JM Eppley, SC Schuster, NC Kyrpides, MS Rappé (2011) Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria. Standards in Genomic Sciences 5: 269.

Li B, DM Karl, RM Letelier, MJ Church (2011) Size-dependent photosynthetic variability in the North Pacific Subtropical Gyre. Marine Ecology Progress Series 440: 27-40.

Viviani DA, KM Björkman, DM Karl, MJ Church (2011) Plankton metabolism in surface waters of the tropical and subtropical Pacific Ocean. Aquatic Microbial Ecology 62: 1-12.

Watkins-Brandt KS, RM Letelier, YH Spitz, MJ Church, D Böttjer, AE White (2011) Addition of inorganic or organic phosphorus enhances nitrogen and carbon fixation in the oligotrophic North Pacific. Marine Ecology Progress Series 432: 17-29.

2010

Church MJ, B Wai, DM Karl, EF DeLong (2010) Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean. Environmental Microbiology 12: 679-688.

Luo Y-W , MAM Friedrichs, SC Doney, MJ Church, HW Ducklow (2010) Oceanic heterotrophic bacterial nutrition by semilabile DOM as revealed by data assimilative modeling. Aquatic Microbial Ecology 60: 273-287.

Saba VS, MAM Friedrichs, M‐E Carr, D Antoine, RA Armstrong, I Asanuma, O Aumont, NR Bates, MJ Behrenfeld, V Bennington, L Bopp, J Bruggeman, ET Buitenhuis, MJ Church, AM Ciotti, SC Doney, M Dowell, J Dunne, S Dutkiewicz, W Gregg, N Hoepffner, KJW Hyde, J Ishizaka, T Kameda, DM Karl, I Lima, MW Lomas, J Marra, GA McKinley, F Mélin, JK Moore, A Morel, J O’Reilly, B Salihoglu, M Scardi, TJ Smyth, S Tang, J Tjiputra, J Uitz, M Vichi, K Waters, TK Westberry, A Yool (2010) Challenges of modeling depth‐integrated marine primary productivity over multiple decades: A case study at BATS and HOT. Global Biogeochemical Cycles 24, GB3020, doi:10.1029/2009GB003655.

2009

Church MJ (2009) The trophic tapestry of the sea. Proceedings of the National Academy of Sciences, USA 106: 15519-15520.

Church MJ, C Mahaffey, RM Letelier, R Lukas, JP Zehr, DM Karl (2009) Physical forcing of nitrogen fixation and diazotroph community structure in the North Pacific Subtropical Gyre. Global Biogeochemical Cycles 23, GB2020, doi:10.1029/2008GB003418.

Eiler A, DH Hayakawa, MJ Church, DM Karl, MS Rappé (2009) Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific Subtropical Gyre. Environmental Microbiology 11: 2291-2300.

Dore JE, R Lukas, DW Sadler, MJ Church, DM Karl (2009) Physical and biogeochemical modulation of ocean acidification in the central North Pacific. Proceedings of the National Academy of Sciences, USA 106: 12235-12240.

2008

Church MJ (2008) Resource control of bacterial dynamics in the sea. In: Microbial Ecology of the Oceans, [ed] DL Kirchman. John Wiley & Sons, Inc. New Jersey, pp 335-382.

Church MJ, KM Bjorkman, DM Karl, MA Saito, JP Zehr (2008) Regional distributions of nitrogen-fixing bacteria in the Pacific Ocean. Limnology and Oceanography 53: 63-77.

Dore JE, RM Letelier, MJ Church, R Lukas, DM Karl (2008) Summer phytoplankton blooms in the oligotrophic North Pacific Subtropical Gyre: Historical perspective and recent observations. Progress in Oceanography 76: 2-38.

Fong AA, DM Karl, R Lukas, RM Letelier, JP Zehr, MJ Church (2008) Nitrogen fixation in an anticyclonic eddy in the oligotrophic North Pacific Ocean. The ISME Journal 2: 663-676.

Grabowski MNW, MJ Church, DM Karl (2008) Nitrogen fixation rates and controls at Stn ALOHA. Aquatic Microbial Ecology 52: 175-183.

Karl DM, L Beversdorf, KM Björkman, MJ Church, A Martinez, EF Delong (2008) Aerobic production of methane in the sea. Nature Geoscience 1: 473-478.

Karl DM, RR Bidigare, MJ Church, JE Dore, RM Letelier, C Mahaffey, JP Zehr (2008) The nitrogen cycle in the North Pacific Trades biome: an evolving paradigm. In: Nitrogen in the Marine Environment, [eds] DG Capone, EJ Carpenter, M Mulholland, DA Bronk. Academic Press, New York, pp: 705-769.

2007

Corno G, DM Karl, MJ Church, RM Letelier, R Lukas, RR Bidigare, MR Abbott (2007) Impact of climate forcing on ecosystem processes in the North Pacific Subtropical Gyre. Journal of Geophysical Research-Oceans, 112 (C4).

Goebel NL, CA Edwards, MJ Church, JP Zehr (2007) Modeled contributions of three types of diazotrophs to nitrogen fixation at Station ALOHA. The ISME Journal 1: 606-619.

McAndrew PM, KM Bjorkman, MJ Church, PJ Morris, N Jachowski, PJ le B Williams, DM Karl (2007) Metabolic response of oligotrophic plankton communities to deep water nutrient enrichment. Marine Ecology Progress Series 332: 63-75.

Mincer TJ, MJ Church, LT Taylor, C Preston, DM Karl, EF DeLong (2007) Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environmental Microbiology 9: 1162-1175.

Zehr JP, JP Montoya, BD Jenkins, I Hewson, E Mondragon, CM Short, MJ Church, A Hansen, DM Karl (2007) Nitrogenase gene expression North Pacific subtropical gyre. Limnology and Oceanography 52: 169-183.

2006

Church MJ, HW Ducklow, RM Letelier, DM Karl (2006) Temporal and vertical dynamics in picoplankton photoheterotrophic production in the subtropical North Pacific Ocean. Aquatic Microbial Ecology 45: 41-53.

Zehr JP, MJ Church, PH Moisander (2006) Diversity, distribution and biogeochemical significance of nitrogen-fixing microorganisms in anoxic and suboxic ocean environments. In Past and Present Water Column Anoxia [ed. LN Neterin], NATO Science Series: IV: Earth and Environmental Sciences Volume 64, pp 337-369.

2005

Church MJ, BD Jenkins, DM Karl, JP Zehr (2005) Vertical distributions of nitrogen-fixing phylotypes at Stn ALOHA in the oligotrophic North Pacific Ocean. Aquatic Microbial Ecology 38: 3-14.

Church MJ, CM Short, BD Jenkins, DM Karl, JP Zehr (2005) Temporal patterns of nitrogenase gene (nifH) expression in the oligotrophic North Pacific Ocean. Applied and Environmental Microbiology 71: 5362-5370.

2004

Church MJ, HW Ducklow, DM Karl (2004) Light dependence of [3H] leucine incorporation in the oligotrophic North Pacific Ocean. Applied and Environmental Microbiology 70: 4079-4087.

2003

Zehr JP, LL Crumbliss, MJ Church, EO Omoregie, BD Jenkins (2003) Nitrogenase genes in PCR and RT-PCR reagents: implications for studies of diversity of functional genes. Biotechniques 35: 996-1013.

Church MJ, EF DeLong, HW Ducklow, MB Karner, CM Preston, DM Karl (2003) Abundance and distribution of planktonic Archaea and Bacteria in the waters west of the Antarctic Peninsula. Limnology and Oceanography 48: 1893-1902.

2002

Church MJ, HW Ducklow, DM Karl (2002) Multiyear increases in dissolved organic matter inventories at Station ALOHA in the North Pacific Subtropical Gyre. Limnology and Oceanography 47: 1-10.

2001

Ducklow H, C Carlson, M Church, D Kirchman, D Smith, G Steward (2001) The seasonal development of the bacterioplankton bloom in the Ross Sea, Antarctica, 1994–1997. Deep Sea Research Part II 48: 4199-4221.

2000

Church MJ, DA Hutchins, HW Ducklow (2000) Limitation of bacterial growth by dissolved organic matter and iron in the Southern Ocean. Applied and Environmental Microbiology 66: 455-466.

1997

Falkner K, M Church, G LeBaron, D Thouron, C Jeandel, MC Stordal, GA Gill, R Mortlock, P Froelich, L-H Cha (1997) Minor and trace element chemistry of Lake Baikal, its tributaries, and surrounding hot springs. Limnology and Oceanography 42: 329-345.

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